Chapter 2. Program Reference
Table of Contents
- Image conversion
- mia-2dimageselect
- mia-2dmultiimageto3d
- mia-2dto3dimage
- mia-2dto3dimageb
- mia-3dgetslice
- mia-3dimageselect
- mia-raw2image
- mia-raw2volume
- Analysis, filtering, combining, and segmentation of 2D images
- mia-2davgmasked
- mia-2dbinarycombine
- mia-2ddistance
- mia-2dfuzzysegment
- mia-2dgrayimage-combine-to-rgb
- mia-2dimagecombine-dice
- mia-2dimagecombiner
- mia-2dimagecreator
- mia-2dimagefilter
- mia-2dimagefilterstack
- mia-2dimagefullstats
- mia-2dimageseries-maximum-intensity-projection
- mia-2dimagestats
- mia-2dlerp
- mia-2dmultiimagevar
- mia-2dsegment-ahmed
- mia-2dsegment-fuzzyw
- mia-2dsegment-local-cmeans
- mia-2dsegment-local-kmeans
- mia-2dsegment-per-pixel-kmeans
- Registration, Comparison, and Transformation of 2D images
- mia-2dcost
- mia-2ddeform
- mia-2dfluid
- mia-2dfluid-syn-registration
- mia-2dforce
- mia-2dimageregistration
- mia-2dmulti-force
- mia-2dmultiimageregistration
- mia-2dtransform
- mia-2dtransformation-to-strain
- Registration of series of 2D images
- mia-2dgroundtruthreg
- mia-2dmany2one-nonrigid
- mia-2dmyoica-full
- mia-2dmyoica-nonrigid
- mia-2dmyoica-nonrigid-parallel
- mia-2dmyoica-nonrigid2
- mia-2dmyoicapgt
- mia-2dmyomilles
- mia-2dmyoperiodic-nonrigid
- mia-2dmyopgt-nonrigid
- mia-2dmyoserial-nonrigid
- mia-2dmyoset-all2one-nonrigid
- Tools for the Analysis of 2D image series
- mia-2deval-transformquantity
- mia-2dtrackpixelmovement
- Tools for Myocardial Perfusion Analysis
- mia-2dmyocard-ica
- mia-2dmyocard-icaseries
- mia-2dmyoseries-compdice
- mia-2dmyoseries-dice
- mia-2dsegcompare
- mia-2dseghausdorff
- mia-2dsegmentcropbox
- mia-2dsegseriesstats
- mia-2dsegshift
- mia-2dsegshiftperslice
- mia-2dseries-mincorr
- mia-2dseries-sectionmask
- mia-2dseries-segdistance
- mia-2dseries2dordermedian
- mia-2dseries2sets
- mia-2dseriescorr
- mia-2dseriesgradMAD
- mia-2dseriesgradvariation
- mia-2dserieshausdorff
- mia-2dseriessmoothgradMAD
- mia-2dseriestovolume
- Processing of series of 2D images in a 3D fashion (out-of-core)
- mia-2dimagestack-cmeans
- mia-2dstack-cmeans-presegment
- mia-2dstackfilter
- mia-3ddistance
- mia-multihist
- Analysis, filtering, combining, and segmentation of 3D images
- mia-3dbinarycombine
- mia-3dbrainextractT1
- mia-3dcombine-imageseries
- mia-3dcombine-mr-segmentations
- mia-3dcrispsegment
- mia-3ddistance-stats
- mia-3dfuzzysegment
- mia-3dgetsize
- mia-3dimagecombine
- mia-3dimagecreator
- mia-3dimagefilter
- mia-3dimagefilterstack
- mia-3dimagestatistics-in-mask
- mia-3dimagestats
- mia-3disosurface-from-stack
- mia-3dlerp
- mia-3dmaskseeded
- mia-3dpropose-boundingbox
- mia-3dsegment-ahmed
- mia-3dsegment-local-cmeans
- Registration, Comparison, and Transformation of 3D images
- mia-3dcost
- mia-3dcost-translatedgrad
- mia-3ddeform
- mia-3dfluid
- mia-3dfluid-syn-registration
- mia-3dforce
- mia-3dlandmarks-distances
- mia-3dlandmarks-transform
- mia-3dnonrigidreg
- mia-3dnonrigidreg-alt
- mia-3drigidreg
- mia-3dtransform
- mia-3dtransform2vf
- mia-3dvf2transform
- mia-3dvfcompare
- Registration of series of 3D images
- mia-3dmany2one-nonrigid
- mia-3dmotioncompica-nonrigid
- mia-3dprealign-nonrigid
- mia-3dserial-nonrigid
- Tools for the Analysis of 3D image series
- mia-3deval-transformquantity
- mia-3dseries-track-intensity
- mia-3dtrackpixelmovement
- Miscellaneous programs
- mia-3dfield2norm
- mia-3dimageaddattributes
- mia-3dvectorfieldcreate
- mia-cmeans
- mia-filenumberpattern
- mia-labelsort
- mia-myowavelettest
- mia-wavelettrans
- Creation, analysis, and filtering of triangular 3D meshes
- mia-3disosurface-from-volume
- mia-mesh-deformable-model
- mia-mesh-to-maskimage
- mia-meshdistance-to-stackmask
- mia-meshfilter
- Help
- mia-plugin-help
- Work in progress
- mia-2dmyocard-segment