mia-2dgroundtruthreg {-i string} {-o string} {-A double} {-B double} {-R double} [
options
...]
This program implements the non-linear registration based on Pseudo Ground Thruth for motion compensation of series of myocardial perfusion images as described in
Note that for this nonlinear motion correction a preceding linear registration step is usually required.
input perfusion data set
output perfusion data set
file name base for registered files
skip images at beginning of series
number of registration passes
spacial neighborhood penalty weight
temporal second derivative penalty weight
correlation threshold for neighborhood analysis
Optimizer used for minimization. For supported plug-ins see Plugin type: minimizer/singlecost
image interpolator kernel. For supported plug-ins see Plugin type: 1d/splinekernel
multi-resolution levels
divcurl regularization weight
divcurl weight scaling with each new pass
start coefficinet rate in spines, gets divided by --c-rate-divider with every pass
cofficient rate divider for each pass
image cost weight
verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:
| debug: | Debug output |
| message: | Normal messages |
| info: | Low level messages |
| error: | Report errors |
| fatal: | Report only fatal errors |
| trace: | Function call trace |
| warning: | Warnings |
| fail: | Report test failures |
print copyright information
print this help
print a short help
print the version number and exit
Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).
Register the perfusion series given by images imageXXXX.exr by using Pseudo Ground Truth estimation. Skip two images at the beginning and otherwiese use the default parameters. Store the result images to 'regXXXX.exr'.
mia-2dgroundtruthreg -i imageXXXX.exr -o regXXXX.exr -k 2
Gert Wollny