mia-2dmyoserial-nonrigid {-i string} {-o string} [
options
...] [
Plugin type: 2dimage/fullcost
...]
This program runs the non-rigid motion compensation registration of an perfusion image series. The registration is run in a serial manner, this is, only images in temporal succession are registered, and the obtained transformations are applied accumulated to reach full registration. See:
input perfusion data set
output perfusion data set
file name base for registered fiels
Optimizer used for minimization. For supported plug-ins see Plugin type: minimizer/singlecost
multi-resolution levels
transformation type. For supported plug-ins see Plugin type: 2dimage/transform
reference frame (-1 == use image in the middle)
skip registration of these images at the beginning of the series
verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:
| debug: | Debug output |
| message: | Normal messages |
| info: | Low level messages |
| error: | Report errors |
| fatal: | Report only fatal errors |
| trace: | Function call trace |
| warning: | Warnings |
| fail: | Report test failures |
print copyright information
print this help
print a short help
print the version number and exit
Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).
Register the perfusion series given in 'segment.set' to reference image 30. Skip two images at the beginning and using mutual information as cost function, and penalize the transformation by divcurl with weight 5. Store the result in 'registered.set'.
mia-2dmyoserial-nonrigid -i segment.set -o registered.set -k 2 -r 30 image:cost=mi -f spline:rate=5,penalty=[divcurl:weight=5]
Gert Wollny