mia-3dgetslice {-i io} {-o io} [
options
...]
This program is used to extract 2D slices from a 3D data set and store them in separate files. Output files will be numbered according to their slice index.
input image(s) to be filtered. For supported file types see Plugin type: 3dimage/io
output image(s). If number != 1 than this is used as a base name and should be given without extension since this will be based on the '--type' option. If number=1 then this exact file name will be used.. For supported file types see Plugin type: 2dimage/io
output file type for number != 1
start slice number
number of slices (all=0)
minimum number of digits of the file name numbers (if n != 1)
slice direction (xy=axial, xz=coronal, yz=saggital)
| yz: | get yz (saggital) slice |
| xz: | get xz (coronal) slice |
| xy: | get xy (axial) slice |
verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:
| debug: | Debug output |
| message: | Normal messages |
| info: | Low level messages |
| error: | Report errors |
| fatal: | Report only fatal errors |
| trace: | Function call trace |
| warning: | Warnings |
| fail: | Report test failures |
print copyright information
print this help
print a short help
print the version number and exit
Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).
Store 5 coronal slices starting at slice 120 coronalXXXX.png from image.v.
mia-3dgetslice -i image.v -o coronal -t png -n 5 -s 120
Gert Wollny