mia-3dmany2one-nonrigid {-i io} [
options
...] [
Plugin type: 3dimage/fullcost
...]
This program runs the non-rigid registration of an image series by registereing all images to a user-selected reference.
input perfusion data set. For supported file types see Plugin type: 3dimage/io
file name for registered files. For supported file types see Plugin type: 3dimage/io
Optimizer used for minimization
multi-resolution levels
transformation type. For supported plug-ins see Plugin type: 3dimage/transform
reference frame (-1 == use image in the middle)
verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:
| debug: | Debug output |
| message: | Normal messages |
| info: | Low level messages |
| error: | Report errors |
| fatal: | Report only fatal errors |
| trace: | Function call trace |
| warning: | Warnings |
| fail: | Report test failures |
print copyright information
print this help
print a short help
print the version number and exit
Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).
Register the images given as numbered files imagesXXXX.v by optimizing a spline based transformation with a coefficient rate of 16 pixel using a weighted combination of normalized gradient fields and SSD as cost measure, and penalize the transformation by using divcurl with aweight of 2.0. Store the resultsing images in registeredXXXX.v.
mia-3dmany2one-nonrigid -i images0000.v -o registered%04d.v -F spline:rate=16 image:cost=[ngf:eval=ds],weight=2.0 image:cost=ssd,weight=0.1 divcurl:weight=2.0
Gert Wollny