Plugin type: 3dimage/fullcost
This program runs the non-rigid registration of an image series by registereing all images to a user-selected reference.
Optimizer used for minimization
transformation type. For supported plug-ins see Plugin type: 3dimage/transform
reference frame (-1 == use image in the middle)
verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:
|info:||Low level messages|
|trace:||Function call trace|
|fail:||Report test failures|
|fatal:||Report only fatal errors|
print copyright information
print this help
print a short help
print the version number and exit
Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).
Register the images given as numbered files imagesXXXX.v by optimizing a spline based transformation with a coefficient rate of 16 pixel using a weighted combination of normalized gradient fields and SSD as cost measure, and penalize the transformation by using divcurl with aweight of 2.0. Store the resultsing images in registeredXXXX.v.
mia-3dmany2one-nonrigid -i images0000.v -o registered%04d.v -F spline:rate=16 image:cost=[ngf:eval=ds],weight=2.0 image:cost=ssd,weight=0.1 divcurl:weight=2.0