These plug-ins define creators for 3D transformations.
affine axisrot raffine rigid rotation rotbend spline translate vf
Affine transformation (12 degrees of freedom). Supported parameters are:
| Name | Type | Default | Description |
|---|---|---|---|
| imgboundary | factory | mirror | image interpolation boundary conditions. For supported plug-ins see Plugin type: 1d/splinebc |
| imgkernel | factory | [bspline:d=3] | image interpolator kernel. For supported plug-ins see Plugin type: 1d/splinekernel |
Restricted rotation transformation (1 degrees of freedom). The transformation is restricted to the rotation around the given axis about the given rotation center. Supported parameters are:
| Name | Type | Default | Description |
|---|---|---|---|
| axis | 3dfvector | (required) | rotation axis |
| imgboundary | factory | mirror | image interpolation boundary conditions. For supported plug-ins see Plugin type: 1d/splinebc |
| imgkernel | factory | [bspline:d=3] | image interpolator kernel. For supported plug-ins see Plugin type: 1d/splinekernel |
| origin | 3dfvector | (required) | center of the transformation |
Restricted affine transformation (3 degrees of freedom). The transformation is restricted to the rotation around the given axis and shearing along the two axis perpendicular to the given one. Supported parameters are:
| Name | Type | Default | Description |
|---|---|---|---|
| axis | 3dfvector | (required) | rotation axis |
| imgboundary | factory | mirror | image interpolation boundary conditions. For supported plug-ins see Plugin type: 1d/splinebc |
| imgkernel | factory | [bspline:d=3] | image interpolator kernel. For supported plug-ins see Plugin type: 1d/splinekernel |
| origin | 3dfvector | (required) | center of the transformation |
Rigid transformation, i.e. rotation and translation (six degrees of freedom).. Supported parameters are:
| Name | Type | Default | Description |
|---|---|---|---|
| imgboundary | factory | mirror | image interpolation boundary conditions. For supported plug-ins see Plugin type: 1d/splinebc |
| imgkernel | factory | [bspline:d=3] | image interpolator kernel. For supported plug-ins see Plugin type: 1d/splinekernel |
| origin | 3dfvector | [[0,0,0]] | Relative rotation center, i.e. <0.5,0.5,0.5> corresponds to the center of the volume |
Rotation transformation (three degrees of freedom).. Supported parameters are:
| Name | Type | Default | Description |
|---|---|---|---|
| imgboundary | factory | mirror | image interpolation boundary conditions. For supported plug-ins see Plugin type: 1d/splinebc |
| imgkernel | factory | [bspline:d=3] | image interpolator kernel. For supported plug-ins see Plugin type: 1d/splinekernel |
| origin | 3dfvector | [[0,0,0]] | Relative rotation center, i.e. <0.5,0.5,0.5> corresponds to the center of the volume |
Restricted transformation (4 degrees of freedom). The transformation is restricted to the rotation around the x and y axis and a bending along the x axis, independedn in each direction, with the bending increasing with the squared distance from the rotation axis.. Supported parameters are:
| Name | Type | Default | Description |
|---|---|---|---|
| imgboundary | factory | mirror | image interpolation boundary conditions. For supported plug-ins see Plugin type: 1d/splinebc |
| imgkernel | factory | [bspline:d=3] | image interpolator kernel. For supported plug-ins see Plugin type: 1d/splinekernel |
| norot | bool | 0 | Don't optimize the rotation |
| origin | 3dfvector | (required) | center of the transformation |
Free-form transformation that can be described by a set of B-spline coefficients and an underlying B-spline kernel.. Supported parameters are:
| Name | Type | Default | Description |
|---|---|---|---|
| anisorate | 3dfvector | [[0,0,0]] | anisotropic coefficient rate in pixels, nonpositive values will be overwritten by the 'rate' value. |
| debug | bool | 0 | enable additional debugging output |
| imgboundary | factory | mirror | image interpolation boundary conditions. For supported plug-ins see Plugin type: 1d/splinebc |
| imgkernel | factory | [bspline:d=3] | image interpolator kernel. For supported plug-ins see Plugin type: 1d/splinekernel |
| kernel | factory | [bspline:d=3] | transformation spline kernel. For supported plug-ins see Plugin type: 1d/splinekernel |
| penalty | factory | transformation penalty energy term. For supported plug-ins see Plugin type: 3dtransform/splinepenalty | |
| rate | float in [1, inf) | 10 | isotropic coefficient rate in pixels |
Translation (three degrees of freedom). Supported parameters are:
| Name | Type | Default | Description |
|---|---|---|---|
| imgboundary | factory | mirror | image interpolation boundary conditions. For supported plug-ins see Plugin type: 1d/splinebc |
| imgkernel | factory | [bspline:d=3] | image interpolator kernel. For supported plug-ins see Plugin type: 1d/splinekernel |
This plug-in implements a transformation that defines a translation for each point of the grid defining the domain of the transformation.. Supported parameters are:
| Name | Type | Default | Description |
|---|---|---|---|
| imgboundary | factory | mirror | image interpolation boundary conditions. For supported plug-ins see Plugin type: 1d/splinebc |
| imgkernel | factory | [bspline:d=3] | image interpolator kernel. For supported plug-ins see Plugin type: 1d/splinekernel |
mia-3dcost-translatedgrad mia-3dmany2one-nonrigid mia-3dnonrigidreg mia-3dnonrigidreg-alt mia-3dprealign-nonrigid mia-3drigidreg mia-3dserial-nonrigid