Plugin type: 3dimage/io

These plug-ins handle loading and storing of 3D images to the supported image file types.

Plugins:

analyze datapool dicom hdf5 inria mhd nifti vff vista vti vtk

analyze

Analyze 7.5 image

Recognized file extensions: .HDR, .hdr

Supported element types: unsigned 8 bit, signed 16 bit, signed 32 bit, floating point 32 bit, floating point 64 bit

datapool

Virtual IO to and from the internal data pool

Recognized file extensions: .@

dicom

Dicom image series as 3D

Recognized file extensions: .DCM, .dcm

Supported element types: signed 16 bit, unsigned 16 bit

hdf5

HDF5 3D image IO

Recognized file extensions: .H5, .h5

Supported element types: binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, signed 64 bit, unsigned 64 bit, floating point 32 bit, floating point 64 bit

inria

INRIA image

Recognized file extensions: .INR, .inr

Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

mhd

MetaIO 3D image IO using the VTK implementation (experimental).

Recognized file extensions: .MHA, .MHD, .mha, .mhd

Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

nifti

NIFTI-1 3D image IO

Recognized file extensions: .NII, .nii

Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, signed 64 bit, unsigned 64 bit, floating point 32 bit, floating point 64 bit

vff

VFF Sun raster format

Recognized file extensions: .VFF, .vff

Supported element types: unsigned 8 bit, signed 16 bit

vista

Vista 3D

Recognized file extensions: .V, .VISTA, .v, .vista

Supported element types: binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

vti

3D image VTK-XML in- and output (experimental).

Recognized file extensions: .VTI, .vti

Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

vtk

3D VTK image legacy in- and output (experimental).

Recognized file extensions: .VTK, .VTKIMAGE, .vtk, .vtkimage

Supported element types: binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

Plugin consumers:

mia-2dmultiimageto3d mia-2dseriestovolume mia-2dto3dimage mia-2dto3dimageb mia-3dbinarycombine mia-3dbrainextractT1 mia-3dcombine-imageseries mia-3dcombine-mr-segmentations mia-3dcost mia-3dcost-translatedgrad mia-3dcrispsegment mia-3ddeform mia-3ddistance-stats mia-3dfield2norm mia-3dfluid mia-3dforce mia-3dfuzzysegment mia-3dgetsize mia-3dgetslice mia-3dimageaddattributes mia-3dimagecombine mia-3dimagecreator mia-3dimagefilter mia-3dimagefilterstack mia-3dimageselect mia-3dimagestatistics-in-mask mia-3dimagestats mia-3disosurface-from-volume mia-3dlerp mia-3dmany2one-nonrigid mia-3dmaskseeded mia-3dmotioncompica-nonrigid mia-3dnonrigidreg mia-3dnonrigidreg-alt mia-3dprealign-nonrigid mia-3dpropose-boundingbox mia-3drigidreg mia-3dsegment-ahmed mia-3dserial-nonrigid mia-3dseries-track-intensity mia-3dtransform mia-mesh-deformable-model mia-mesh-to-maskimage mia-raw2volume combiner:3dimage/filter growmask:3dimage/filter image:3dimage/fullcost labelimage:3dimage/fullcost load:3dimage/filter mask:3dimage/filter maskedimage:3dimage/fullcost taggedssd:3dimage/fullcost tee:3dimage/filter