Plugin type: 2dimage/fullcost

This class of cost functions evaluates the cost resulting from the use of a certain transformation. This may include a penalty term that ensures the smoothness of a transformation or the evaluation of a similarity measure between a transformed study data set and a refernce data set.

Plugins:

image labelimage maskedimage

image

Generalized image similarity cost function that also handles multi-resolution processing. The actual similarity measure is given es extra parameter.. Supported parameters are:

NameTypeDefaultDescription
costfactoryssdCost function kernel. For supported plug-ins see Plugin type: 2dimage/cost
debugbool0Save intermediate resuts for debugging
refio(input)Reference image. For supported file types see Plugin type: 2dimage/io
srcio(input)Study image. For supported file types see Plugin type: 2dimage/io
weightfloat1weight of cost function

labelimage

Similarity cost function that maps labels of two images and handles label-preserving multi-resolution processing.. Supported parameters are:

NameTypeDefaultDescription
debugint in [0, 1]0write the distance transforms to a 3D image
maxlabelint in [2, 32000]256maximum number of labels to consider
refio(input)Reference image. For supported file types see Plugin type: 2dimage/io
srcio(input)Study image. For supported file types see Plugin type: 2dimage/io
weightfloat1weight of cost function

maskedimage

Generalized masked image similarity cost function that also handles multi-resolution processing. The provided masks should be densly filled regions in multi-resolution procesing because otherwise the mask information may get lost when downscaling the image. The reference mask and the transformed mask of the study image are combined by binary AND. The actual similarity measure is given es extra parameter.. Supported parameters are:

NameTypeDefaultDescription
costfactoryssdCost function kernel. For supported plug-ins see Plugin type: 2dimage/maskedcost
refio(input)Reference image. For supported file types see Plugin type: 2dimage/io
ref-maskio(input)Reference image mask (binary). For supported file types see Plugin type: 2dimage/io
srcio(input)Study image. For supported file types see Plugin type: 2dimage/io
src-maskio(input)Study image mask (binary). For supported file types see Plugin type: 2dimage/io
weightfloat1weight of cost function

Plugin consumers:

mia-2dcost mia-2dimageregistration mia-2dmany2one-nonrigid mia-2dmulti-force mia-2dmultiimageregistration mia-2dmyoica-full mia-2dmyoica-nonrigid mia-2dmyoica-nonrigid-parallel mia-2dmyoicapgt mia-2dmyoperiodic-nonrigid mia-2dmyoserial-nonrigid mia-2dmyoset-all2one-nonrigid