Plugin type: 2dimage/fullcost
This program runs non-rigid registration of a series of images given in an image set. All images are registered to one user defined reference image.
input perfusion data set
output perfusion data set
file name basae for registered files, file type is deducted from the image file type in the input data set.
Skip images at the beginning of the series
Optimizer used for minimization
transformation type. For supported plug-ins see Plugin type: 2dimage/transform
reference frame (-1 == use image in the middle)
verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:
|info:||Low level messages|
|fatal:||Report only fatal errors|
|trace:||Function call trace|
|fail:||Report test failures|
print copyright information
print this help
print a short help
print the version number and exit
Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).
Register the perfusion series given in segment.set by optimizing a spline based transformation with a coefficient rate of 16 pixel using Mutual Information and penalize the transformation by using divcurl with aweight of 2.0.
mia-2dmyoset-all2one-nonrigid -i segment.set -o registered.set -f spline:rate=16,penalty=[divcurl:weight=2.0] image:cost=mi,weight=2.0