Comparison, registration, and transformation of images. More...

Data Structures
class	C2DFVectorfieldRegularizer

class	C2DFVectorfieldRegularizerKernel

class	C2DMultiImageNonrigidRegister
	A 2D non-rigid registration class for time-marching PDE based registration. More...

class	C2DPPDivcurlMatrix
	Precomputed matrix for the DivCurl regularization. More...

class	C2DRegTimeStep
	The time step class for time-marching registration algorithms. More...

class	C2DRigidRegister
	Linear Registration of 2D images. More...

class	C2DTransformation
	This is the generic base class for 2D transformations. More...

class	C3DFVectorfieldRegularizer

class	C3DFVectorfieldRegularizerKernel

class	C3DMultiImageRegister
	A 3D non-rigid image registration class. More...

class	C3DPPDivcurlMatrix
	Precomputed Matrix for the DivCurl regularization. More...

class	C3DRegTimeStep
	The time-step part of time-marching registration algorithms. More...

class	C3DRigidRegister
	3D linear registration class More...

class	C3DTransformation
	This is the generic base class for 3D transformations. More...

class	CSplineParzenMI
	Implementation of mutual information based on B-splines. More...

struct	FDeformer3D
	A filter to transform an image. More...

class	TCost< T, V >
	The generic cost function interface. More...

class	TFullCost< Transform >
	Base class for a general cost function. More...

class	TFullCostList< Transform >
	A accumulation of cost functions that are weigted against each other. More...

class	TFullCostPlugin< Transform >
	the base class for the TFullCost cost function plug-ins. More...

class	TMaskedCost< T, M, V >
	The generic cost function interface. More...

class	TNonrigidRegister< dim >
	Class for image registration. More...

class	Transformation< D, I >
	generic base class for transformations More...

class	TRegModel< Dim >
	Base class for PDE model based registrations. More...

class	TTransformCreator< Transform >

class	TTransformCreatorPlugin< Transform >
	Factory class that is used to create the transformation creator. More...

Typedefs
typedef TFullCost< C2DTransformation >	C2DFullCost
	Base class for the full cost functions. More...

typedef TMaskedCost< C2DImage, C2DBitImage, C2DFVectorfield >	C2DMaskedImageCost
	the image-to-image cost function base class More...

typedef TFactory< C2DMaskedImageCost >	C2DMaskedImageCostPlugin
	plug-in for the image-to-image cost function base class More...

typedef THandlerSingleton< TFactoryPluginHandler< C2DMaskedImageCostPlugin > >	C2DMaskedImageCostPluginHandler
	plug-in handler for the image-to-image cost function base class More...

typedef TNonrigidRegister< 2 >	C2DNonrigidRegister

typedef TRegModel< 2 >	C2DRegModel
	the 2D time-marching registration model More...

typedef TFactory< C2DRegModel >	C2DRegModelPlugin
	Plugin for the 2D registration model. More...

typedef TTransformCreator< C2DTransformation >	C2DTransformCreator
	The base class for 2D transformation creators. More...

typedef THandlerSingleton< TFactoryPluginHandler< C2DTransformCreatorPlugin > >	C2DTransformCreatorHandler
	The plugin handler to manage the transformation creators. More...

typedef TFullCost< C3DTransformation >	C3DFullCost
	3D version of the TFullCost More...

typedef TFullCostList< C3DTransformation >	C3DFullCostList
	An accumulation of cost functions that are weigted against each other. More...

typedef TFullCostPlugin< C3DTransformation >	C3DFullCostPlugin
	plugin base class for C3DFullCost objects More...

typedef THandlerSingleton< TFactoryPluginHandler< C3DFullCostPlugin > >	C3DFullCostPluginHandler
	plugin handler for C3DFullCost object creation More...

typedef TCost< C3DImage, C3DFVectorfield >	C3DImageCost
	the image-to-image cost function base class More...

typedef TFactory< C3DImageCost >	C3DImageCostPlugin
	plug-in for the image-to-image cost function base class More...

typedef THandlerSingleton< TFactoryPluginHandler< C3DImageCostPlugin > >	C3DImageCostPluginHandler
	plug-in handler for the image-to-image cost function base class More...

typedef TMaskedCost< C3DImage, C3DBitImage, C3DFVectorfield >	C3DMaskedImageCost
	the image-to-image cost function base class More...

typedef TFactory< C3DMaskedImageCost >	C3DMaskedImageCostPlugin
	plug-in for the image-to-image cost function base class More...

typedef THandlerSingleton< TFactoryPluginHandler< C3DMaskedImageCostPlugin > >	C3DMaskedImageCostPluginHandler
	plug-in handler for the image-to-image cost function base class More...

typedef TNonrigidRegister< 3 >	C3DNonrigidRegister
	Specialization of TNonrigidRegister for 3D data. More...

typedef std::shared_ptr< C2DMaskedImageCost >	P2DMaskedImageCost
	pointer type of the image-to-image cost function base class More...

typedef C2DTransformation::Pointer	P2DTransformation
	Pointer type for the 2D transformation. More...

typedef std::shared_ptr< C2DTransformCreator >	P2DTransformationFactory
	Pointer type to the transformation factory. More...

typedef C3DFullCost::Pointer	P3DFullCost
	pointer of the 3D version of the TFullCost More...

typedef std::shared_ptr< C3DImageCost >	P3DImageCost
	pointer type of the image-to-image cost function base class More...

typedef std::shared_ptr< C3DImageCost >	P3DImageCost
	A 3D non-rigid image registration class. More...

typedef std::shared_ptr< C3DMaskedImageCost >	P3DMaskedImageCost
	pointer type of the image-to-image cost function base class More...

typedef std::shared_ptr< C3DTransformation >	P3DTransformation
	pointer type for a 3D transformation More...

Functions
EXPORT_3D float	get_jump_level (const C3DImage &image)
	evaluate the noise-vs-gradient jump level for the normalized gradient field evaluation More...

EXPORT_3D float	get_jump_level (const C3DImage &image, float noise_level)
	evaluate the noise-vs-gradient jump level for the normalized gradient field evaluation More...

EXPORT_3D C3DFVectorfield	get_nfg (const C3DImage &image)
	evaluate normalized gradiend field of an image More...

EXPORT_3D C3DFVectorfield	get_nfg_j (const C3DImage &image, float jump_level2)
	evaluate normalized gradiend field of an image More...

EXPORT_3D C3DFVectorfield	get_nfg_n (const C3DImage &image, float noise_level)
	evaluate normalized gradiend field of an image More...

EXPORT_3D float	get_noise_level (const C3DImage &image)
	evaluate an approximation of the noise level of an image More...

EXPORT_3D bool	operator!= (const C3DTransformation::const_iterator &a, const C3DTransformation::const_iterator &b)
	Compare two transformation iterators. More...

EXPORT_2D bool	operator!= (const C2DTransformation::const_iterator &a, const C2DTransformation::const_iterator &b)
	Compare two transformation iterators. More...

C2DTransformation::const_iterator	operator+ (C2DTransformation::const_iterator i, size_t delta)
	Move an 2D transformation iterator forward by using its provided += operator don't use a reference to the iterator, because we use the created copy as result. More...

Detailed Description

Comparison, registration, and transformation of images.

Typedef Documentation

◆ C2DFullCost

typedef TFullCost<C2DTransformation> C2DFullCost

Base class for the full cost functions.

This typedef is the base class of the full-cost cost funtions.

Definition at line 37 of file 2d/fullcost.hh.

◆ C2DMaskedImageCost

typedef TMaskedCost<C2DImage, C2DBitImage, C2DFVectorfield> C2DMaskedImageCost

the image-to-image cost function base class

Definition at line 35 of file 2d/maskedcost.hh.

◆ C2DMaskedImageCostPlugin

typedef TFactory<C2DMaskedImageCost> C2DMaskedImageCostPlugin

plug-in for the image-to-image cost function base class

Definition at line 47 of file 2d/maskedcost.hh.

◆ C2DMaskedImageCostPluginHandler

typedef THandlerSingleton<TFactoryPluginHandler<C2DMaskedImageCostPlugin> > C2DMaskedImageCostPluginHandler

plug-in handler for the image-to-image cost function base class

Definition at line 53 of file 2d/maskedcost.hh.

◆ C2DNonrigidRegister

typedef TNonrigidRegister<2> C2DNonrigidRegister

Specialization of TNonrigidRegister for 2D data

Definition at line 37 of file 2d/nonrigidregister.hh.

◆ C2DRegModel

typedef TRegModel<2> C2DRegModel

the 2D time-marching registration model

The 2D time-marching registration model

Definition at line 49 of file 2d/model.hh.

◆ C2DRegModelPlugin

typedef TFactory<C2DRegModel> C2DRegModelPlugin

Plugin for the 2D registration model.

Definition at line 58 of file 2d/model.hh.

◆ C2DTransformCreator

typedef TTransformCreator<C2DTransformation> C2DTransformCreator

The base class for 2D transformation creators.

Remarks: should the name be C2DTransformFactory?

Definition at line 37 of file 2d/transformfactory.hh.

◆ C2DTransformCreatorHandler

typedef THandlerSingleton<TFactoryPluginHandler<C2DTransformCreatorPlugin> > C2DTransformCreatorHandler

The plugin handler to manage the transformation creators.

Definition at line 51 of file 2d/transformfactory.hh.

◆ C3DFullCost

typedef TFullCost<C3DTransformation> C3DFullCost

3D version of the TFullCost

Definition at line 34 of file 3d/fullcost.hh.

◆ C3DFullCostList

typedef TFullCostList<C3DTransformation> C3DFullCostList

An accumulation of cost functions that are weigted against each other.

Definition at line 30 of file 3d/multicost.hh.

◆ C3DFullCostPlugin

typedef TFullCostPlugin<C3DTransformation> C3DFullCostPlugin

plugin base class for C3DFullCost objects

Definition at line 46 of file 3d/fullcost.hh.

◆ C3DFullCostPluginHandler

typedef THandlerSingleton<TFactoryPluginHandler<C3DFullCostPlugin> > C3DFullCostPluginHandler

plugin handler for C3DFullCost object creation

Definition at line 52 of file 3d/fullcost.hh.

◆ C3DImageCost

typedef TCost<C3DImage, C3DFVectorfield> C3DImageCost

the image-to-image cost function base class

Definition at line 35 of file 3d/cost.hh.

◆ C3DImageCostPlugin

typedef TFactory<C3DImageCost> C3DImageCostPlugin

plug-in for the image-to-image cost function base class

Definition at line 47 of file 3d/cost.hh.

◆ C3DImageCostPluginHandler

typedef THandlerSingleton<TFactoryPluginHandler<C3DImageCostPlugin> > C3DImageCostPluginHandler

plug-in handler for the image-to-image cost function base class

Definition at line 53 of file 3d/cost.hh.

◆ C3DMaskedImageCost

typedef TMaskedCost<C3DImage, C3DBitImage, C3DFVectorfield> C3DMaskedImageCost

the image-to-image cost function base class

Definition at line 33 of file 3d/maskedcost.hh.

◆ C3DMaskedImageCostPlugin

typedef TFactory<C3DMaskedImageCost> C3DMaskedImageCostPlugin

plug-in for the image-to-image cost function base class

Definition at line 45 of file 3d/maskedcost.hh.

◆ C3DMaskedImageCostPluginHandler

typedef THandlerSingleton<TFactoryPluginHandler<C3DMaskedImageCostPlugin> > C3DMaskedImageCostPluginHandler

plug-in handler for the image-to-image cost function base class

Definition at line 51 of file 3d/maskedcost.hh.

◆ C3DNonrigidRegister

typedef TNonrigidRegister<3> C3DNonrigidRegister

Specialization of TNonrigidRegister for 3D data.

Definition at line 36 of file 3d/nonrigidregister.hh.

◆ P2DMaskedImageCost

typedef std::shared_ptr<C2DMaskedImageCost > P2DMaskedImageCost

pointer type of the image-to-image cost function base class

Definition at line 41 of file 2d/maskedcost.hh.

◆ P2DTransformation

typedef C2DTransformation::Pointer P2DTransformation

Pointer type for the 2D transformation.

Definition at line 405 of file 2d/transform.hh.

◆ P2DTransformationFactory

typedef std::shared_ptr<C2DTransformCreator > P2DTransformationFactory

Pointer type to the transformation factory.

Definition at line 43 of file 2d/transformfactory.hh.

◆ P3DFullCost

typedef C3DFullCost::Pointer P3DFullCost

pointer of the 3D version of the TFullCost

Definition at line 40 of file 3d/fullcost.hh.

◆ P3DImageCost [1/2]

typedef std::shared_ptr<C3DImageCost > P3DImageCost

pointer type of the image-to-image cost function base class

Definition at line 41 of file 3d/cost.hh.

◆ P3DImageCost [2/2]

typedef std::shared_ptr<C3DImageCost > P3DImageCost

A 3D non-rigid image registration class.

A 3D non-rigid image registration class. Initialise it with the desired parameters and call it with the source (template) and reference image to obtain a vector field describing the registration.

Definition at line 44 of file 3d/register.hh.

◆ P3DMaskedImageCost

typedef std::shared_ptr<C3DMaskedImageCost > P3DMaskedImageCost

pointer type of the image-to-image cost function base class

Definition at line 39 of file 3d/maskedcost.hh.

◆ P3DTransformation

typedef std::shared_ptr<C3DTransformation > P3DTransformation

pointer type for a 3D transformation

Definition at line 37 of file 3d/transform.hh.

Function Documentation

◆ get_jump_level() [1/2]

EXPORT_3D float get_jump_level ( const C3DImage & image )

evaluate the noise-vs-gradient jump level for the normalized gradient field evaluation

Parameters

image the input image

Returns: the jump level

◆ get_jump_level() [2/2]

EXPORT_3D float get_jump_level	(	const C3DImage &	image,
		float	noise_level
	)

evaluate the noise-vs-gradient jump level for the normalized gradient field evaluation

Parameters

image	the input image
noise_level

Returns: the jump level

◆ get_nfg()

EXPORT_3D C3DFVectorfield get_nfg ( const C3DImage & image )

evaluate normalized gradiend field of an image

Evaluate the normalized gradient field of an image. Noise level and jump level are estimated.

Parameters

image the input image

Returns: the normalized gradient field

◆ get_nfg_j()

EXPORT_3D C3DFVectorfield get_nfg_j	(	const C3DImage &	image,
		float	jump_level2
	)

evaluate normalized gradiend field of an image

Evaluate the normalized gradient field of an image using a pre-defined squared jump-level

Parameters

image	the input image
jump_level2

Returns: the normalized gradient field

◆ get_nfg_n()

EXPORT_3D C3DFVectorfield get_nfg_n	(	const C3DImage &	image,
		float	noise_level
	)

evaluate normalized gradiend field of an image

Evaluate the normalized gradient field of an image using a pre-defined noise level

Parameters

image	the input image
noise_level

Returns: the normalized gradient field

◆ get_noise_level()

EXPORT_3D float get_noise_level ( const C3DImage & image )

evaluate an approximation of the noise level of an image

Parameters

image the input image

Returns: the noise level

◆ operator!=() [1/2]

EXPORT_3D bool operator!=	(	const C3DTransformation::const_iterator &	a,
		const C3DTransformation::const_iterator &	b
	)

Compare two transformation iterators.

Parameters

a
b

Returns: true if iterators are not equal, false otherwise

◆ operator!=() [2/2]

EXPORT_2D bool operator!=	(	const C2DTransformation::const_iterator &	a,
		const C2DTransformation::const_iterator &	b
	)

Compare two transformation iterators.

Parameters

a
b

Returns: true if iterators are not equal, false otherwise

Referenced by operator<<().

◆ operator+()

C2DTransformation::const_iterator operator+	(	C2DTransformation::const_iterator	i,
		size_t	delta
	)

inline

Move an 2D transformation iterator forward by using its provided += operator don't use a reference to the iterator, because we use the created copy as result.

Definition at line 414 of file 2d/transform.hh.

Data Structures

Typedefs

Functions

Detailed Description

Typedef Documentation

◆ C2DFullCost

◆ C2DMaskedImageCost

◆ C2DMaskedImageCostPlugin

◆ C2DMaskedImageCostPluginHandler

◆ C2DNonrigidRegister

◆ C2DRegModel

◆ C2DRegModelPlugin

◆ C2DTransformCreator

◆ C2DTransformCreatorHandler

◆ C3DFullCost

◆ C3DFullCostList

◆ C3DFullCostPlugin

◆ C3DFullCostPluginHandler

◆ C3DImageCost

◆ C3DImageCostPlugin

◆ C3DImageCostPluginHandler

◆ C3DMaskedImageCost

◆ C3DMaskedImageCostPlugin

◆ C3DMaskedImageCostPluginHandler

◆ C3DNonrigidRegister

◆ P2DMaskedImageCost

◆ P2DTransformation

◆ P2DTransformationFactory

◆ P3DFullCost

◆ P3DImageCost [1/2]

◆ P3DImageCost [2/2]

◆ P3DMaskedImageCost

◆ P3DTransformation

Function Documentation

◆ get_jump_level() [1/2]

◆ get_jump_level() [2/2]

◆ get_nfg()

◆ get_nfg_j()

◆ get_nfg_n()

◆ get_noise_level()

◆ operator!=() [1/2]

◆ operator!=() [2/2]

◆ operator+()