Plugin type: 3dimage/transform

These plug-ins define creators for 3D transformations.

Plugins:

affine rigid spline translate vf

affine

Affine transformation (12 degrees of freedom). Supported parameters are:

NameTypeDefaultDescription
imgboundaryfactorymirrorimage interpolation boundary conditions. For supported plug-ins see Plugin type: 1d/splinebc
imgkernelfactory[bspline:d=3]image interpolator kernel. For supported plug-ins see Plugin type: 1d/splinekernel

rigid

Rigid transformation, i.e. rotation and translation (six degrees of freedom).. Supported parameters are:

NameTypeDefaultDescription
imgboundaryfactorymirrorimage interpolation boundary conditions. For supported plug-ins see Plugin type: 1d/splinebc
imgkernelfactory[bspline:d=3]image interpolator kernel. For supported plug-ins see Plugin type: 1d/splinekernel

spline

Free-form transformation that can be described by a set of B-spline coefficients and an underlying B-spline kernel.. Supported parameters are:

NameTypeDefaultDescription
anisorate3dfvector[<0,0,0>]anisotropic coefficient rate in pixels, nonpositive values will be overwritten by the 'rate' value.
debugbool0enable additional debuging output
imgboundaryfactorymirrorimage interpolation boundary conditions. For supported plug-ins see Plugin type: 1d/splinebc
imgkernelfactory[bspline:d=3]image interpolator kernel. For supported plug-ins see Plugin type: 1d/splinekernel
kernelfactory[bspline:d=3]transformation spline kernel. For supported plug-ins see Plugin type: 1d/splinekernel
ratefloat10isotropic coefficient rate in pixels

translate

Translation (three degrees of freedom). Supported parameters are:

NameTypeDefaultDescription
imgboundaryfactorymirrorimage interpolation boundary conditions. For supported plug-ins see Plugin type: 1d/splinebc
imgkernelfactory[bspline:d=3]image interpolator kernel. For supported plug-ins see Plugin type: 1d/splinekernel

vf

This plug-in implements a transformation that defines a translation for each point of the grid defining the domain of the transformation.. Supported parameters are:

NameTypeDefaultDescription
imgboundaryfactorymirrorimage interpolation boundary conditions. For supported plug-ins see Plugin type: 1d/splinebc
imgkernelfactory[bspline:d=3]image interpolator kernel. For supported plug-ins see Plugin type: 1d/splinekernel

Plugin consumers:

mia-3dcost-translatedgrad mia-3dmany2one-nonrigid mia-3dnonrigidreg mia-3dnonrigidreg-alt mia-3dprealign-nonrigid mia-3drigidreg mia-3dserial-nonrigid