combiner_filter.hh

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/* -*- mia-c++  -*-
 *
 * This file is part of MIA - a toolbox for medical image analysis 
 * Copyright (c) Leipzig, Madrid 1999-2017 Gert Wollny
 *
 * MIA is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 3 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with MIA; if not, see <http://www.gnu.org/licenses/>.
 *
 */

#ifndef mia_template_combiner_filter_hh
#define mia_template_combiner_filter_hh


#include <mia/template/combiner.hh>
#include <mia/core/iohandler.hh>



NS_MIA_BEGIN

template <typename Image> 
class TImageCombinerFilter: public TDataFilter<Image> {
public: 
        TImageCombinerFilter(std::shared_ptr<TImageCombiner<Image>> combiner, 
                             const std::string& other_image_file,  bool reverse); 

        typename Image::Pointer do_filter(const Image& image) const; 

        std::shared_ptr<TImageCombiner<Image>> m_combiner; 
        std::string m_other_image; 
        bool m_reverse; 

}; 


template <class Image> 
class TImageCombinerFilterPlugin: public TDataFilterPlugin<Image>  {
public: 
        TImageCombinerFilterPlugin();
        virtual TDataFilter<Image> *do_create()const;
        virtual const std::string do_get_descr()const; 
private: 
        std::shared_ptr<TImageCombiner<Image>> m_combiner; 
        std::string m_other_image; 
        bool m_reverse; 

};

template <typename Image> 
TImageCombinerFilter<Image>::TImageCombinerFilter(std::shared_ptr<TImageCombiner<Image>> combiner, 
                                                  const std::string& other_image_file,  bool reverse):
        m_combiner(combiner), 
        m_other_image(other_image_file), 
        m_reverse(reverse)
{
        
}

template <typename Image> 
typename Image::Pointer TImageCombinerFilter<Image>::do_filter(const Image& image) const
{

        auto other_image = load_image<typename Image::Pointer>(m_other_image); 
        if (m_reverse)
                return m_combiner->combine(*other_image, image); 
        else 
                return m_combiner->combine(image, *other_image);
}


template <typename Image> 
TImageCombinerFilterPlugin<Image>::TImageCombinerFilterPlugin():
        TDataFilterPlugin<Image>("combiner"), 
        m_reverse(false)
{
        typedef typename IOHandler_of<Image>::type IOHandler; 
        this->add_parameter("op", make_param(m_combiner, "",  true, "Image combiner to be applied to the images")); 
        this->add_parameter("image", new CStringParameter(m_other_image, CCmdOptionFlags::required_input, "second image that is needed in the combiner", 
                                                          &IOHandler::instance())); 
        this->add_parameter("reverse", new CBoolParameter(m_reverse, false, "reverse the order in which the images passed to the combiner")); 
}

template <typename Image> 
TDataFilter<Image> *TImageCombinerFilterPlugin<Image>::do_create()const
{
        return new TImageCombinerFilter<Image>(m_combiner, m_other_image, m_reverse); 
}

template <typename Image> 
const std::string TImageCombinerFilterPlugin<Image>::do_get_descr()const
{
return "Combine two images with the given combiner operator. if 'reverse' is set to false, the first "
"operator is the image passed through the filter pipeline, and the second image is loaded "
        "from the file given with the 'image' parameter the moment the filter is run."; 
}

NS_MIA_END

#endif