3d/splinetransformpenalty.hh
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1 /* -*- mia-c++ -*-
2  *
3  * This file is part of MIA - a toolbox for medical image analysis
4  * Copyright (c) Leipzig, Madrid 1999-2017 Gert Wollny
5  *
6  * MIA is free software; you can redistribute it and/or modify
7  * it under the terms of the GNU General Public License as published by
8  * the Free Software Foundation; either version 3 of the License, or
9  * (at your option) any later version.
10  *
11  * This program is distributed in the hope that it will be useful,
12  * but WITHOUT ANY WARRANTY; without even the implied warranty of
13  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14  * GNU General Public License for more details.
15  *
16  * You should have received a copy of the GNU General Public License
17  * along with MIA; if not, see <http://www.gnu.org/licenses/>.
18  *
19  */
20 
21 #ifndef mia_3d_splinetransformpenalty_hh
22 #define mia_3d_splinetransformpenalty_hh
23 
24 #include <mia/3d/interpolator.hh>
25 #include <mia/3d/datafield.hh>
26 #include <mia/core/vector.hh>
27 #include <mia/core/product_base.hh>
28 
29 
31 
40 
41 public:
43  static const char *data_descr;
45  static const char *type_descr;
46 
52  C3DSplineTransformPenalty(double weight, bool normalize);
53 
55  C3DSplineTransformPenalty& operator = (const C3DSplineTransformPenalty& org) = delete;
56 
61  C3DSplineTransformPenalty *clone() const __attribute__((warn_unused_result));
62 
63  virtual ~C3DSplineTransformPenalty();
64 
71  void initialize(const C3DBounds& size, const C3DFVector& range, PSplineKernel kernel);
72 
78  double value(const C3DFVectorfield& coefficients) const;
79 
88  double value_and_gradient(const C3DFVectorfield& coefficients, CDoubleVector& gradient) const;
89 
90 protected:
91 
92 
93 
94  const C3DBounds& get_size() const;
95 
96  const C3DFVector& get_range() const;
97 
98  PSplineKernel get_kernel() const;
99 
100  double get_weight() const;
101 
102  bool get_normalize() const;
103 
104 private:
105 
106  virtual void do_initialize() = 0;
107 
108  virtual double do_value(const C3DFVectorfield& coefficients) const = 0;
109 
110  virtual double do_value_and_gradient(const C3DFVectorfield& coefficients, CDoubleVector& gradient) const = 0;
111 
112  virtual C3DSplineTransformPenalty *do_clone() const = 0;
113 
114  double m_weight;
115  bool m_normalize;
116 
117  C3DBounds m_size;
118  C3DFVector m_range;
119  PSplineKernel m_kernel;
120 };
121 
122 typedef std::shared_ptr<C3DSplineTransformPenalty> P3DSplineTransformPenalty;
123 
124 
125 class EXPORT_3D C3DSplineTransformPenaltyPlugin: public TFactory<C3DSplineTransformPenalty> {
126 public:
127  C3DSplineTransformPenaltyPlugin(char const * const name);
128 private:
129  virtual Product *do_create() const __attribute__((warn_unused_result));
130  virtual Product *do_create(float weight, bool normalize) const __attribute__((warn_unused_result)) = 0 ;
131 
132  float m_weight;
133  bool m_normalize;
134 };
135 
136 
140 
141 
143 
144 
145 EXPORT_3D C3DSplineTransformPenaltyPluginHandler::ProductPtr produce_3d_spline_transform_penalty(const std::string& descr);
146 
147 
149 public:
151 };
152 
154 
155 #endif
the singleton that a plug-in handler really is
Definition: handler.hh:157
Base class for transformation penalties in spline based deformations.
a 3D field of floating point single accuracy 3D vectors
A wrapper around the c-array to provide an STL like interface for iterators.
Definition: core/vector.hh:75
class EXPORT_CORE CMeans private
std::shared_ptr< Image > normalize(const Image &image)
a normalizer for image intensities
Definition: normalize.hh:131
#define NS_MIA_BEGIN
conveniance define to start the mia namespace
Definition: defines.hh:33
#define EXPORT_3D
Definition: defines3d.hh:44
THandlerSingleton< TFactoryPluginHandler< C3DSplineTransformPenaltyPlugin > > C3DSplineTransformPenaltyPluginHandler
Plugin handler for image combiner plugins.
std::shared_ptr< CSplineKernel > PSplineKernel
This is tha base of all plugins that create "things", like filters, cost functions time step operator...
Definition: factory.hh:49
C3DSplineTransformPenalty plugin_data
std::shared_ptr< C3DSplineTransformPenalty > P3DSplineTransformPenalty
The base class for all plug-in created object.
Definition: product_base.hh:40
EXPORT_3D C3DSplineTransformPenaltyPluginHandler::ProductPtr produce_3d_spline_transform_penalty(const std::string &descr)
FACTORY_TRAIT(C3DSplineTransformPenaltyPluginHandler)
C3DSplineTransformPenalty plugin_type
#define NS_MIA_END
conveniance define to end the mia namespace
Definition: defines.hh:36