mia-3dcombine-mr-segmentations {-i io} {-o io} [ options ...] [ Plugin type: 3dimage/io ...]


This programs takes various segmentation masks of the same data and a tissue probability image set and combines them into one labeled image. The masks are translated to labels according to the position on the command line. If a voxel is set as belonging to more then one mask, the probabilities are consulted.


-i, --in-file=(input, required); io

input probability images. The number of mask images must correspond to the number of probability images given here.. For supported file types see Plugin type: 3dimage/io

-o, --out-file=(output, required); io

output image that contains the labeling.. For supported file types see Plugin type: 3dimage/io

Help & Info

-V, --verbose=warning; dict

verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

info:Low level messages
trace:Function call trace
fail:Report test failures
error:Report errors
debug:Debug output
message:Normal messages
fatal:Report only fatal errors
--copyright=(); bool

print copyright information

-h, --help=(); bool

print this help

-?, --usage=(); bool

print a short help

--version=(); bool

print the version number and exit


--threads=-1; int

Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).




Gert Wollny