mia-2dsegshift

Sysnopis:

mia-2dsegshift {-i io} {-o io} [ options ...]

Description:

This program move the segmentation(s) of an image series by using a shift that is equal for all slices. The program also may remove images from the begin of the series. The program can be used to correct the segmentation of the images if the images where cropped.

Options:

-i, --in-file=(input, required); io

input segmentation set. For supported file types see Plugin type: 2dimage/io

-o, --out-file=(output, required); io

input segmentation set. For supported file types see Plugin type: 2dimage/io

-g, --image-file=crop; stringSTRING

output image filename base

-S, --shift=[0,0]; 2dfvector

shift of segmentation

-k, --skip=2; ulong

skip frames at the beginning

Help & Info

-V, --verbose=warning; dict

verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

info:Low level messages
trace:Function call trace
fail:Report test failures
warning:Warnings
error:Report errors
debug:Debug output
message:Normal messages
fatal:Report only fatal errors
--copyright=(); bool

print copyright information

-h, --help=(); bool

print this help

-?, --usage=(); bool

print a short help

--version=(); bool

print the version number and exit

Processing

--threads=-1; int

Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

Example:

Shift the segmentations of a set segement.set by -20 pixels in horizontal direction and -30 pixels in vertical direction (as if the images where cropped starting at (20,30) and store it in translate.set. The shiftes files are named translatedXXXX.png

mia-2dsegshift -i segment.set -o translate.set -g translated -S "<20,30>"

Author(s):

Gert Wollny