3d/register.hh
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1 /* -*- mia-c++ -*-
2  *
3  * This file is part of MIA - a toolbox for medical image analysis
4  * Copyright (c) Leipzig, Madrid 1999-2017 Gert Wollny
5  *
6  * MIA is free software; you can redistribute it and/or modify
7  * it under the terms of the GNU General Public License as published by
8  * the Free Software Foundation; either version 3 of the License, or
9  * (at your option) any later version.
10  *
11  * This program is distributed in the hope that it will be useful,
12  * but WITHOUT ANY WARRANTY; without even the implied warranty of
13  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14  * GNU General Public License for more details.
15  *
16  * You should have received a copy of the GNU General Public License
17  * along with MIA; if not, see <http://www.gnu.org/licenses/>.
18  *
19  */
20 
21 #ifndef reg3d_register_hh
22 #define reg3d_register_hh
23 
24 #include <mia/3d/deformer.hh>
25 #include <mia/3d/model.hh>
26 #include <mia/3d/timestep.hh>
27 #include <mia/3d/cost.hh>
28 
29 
31 
32 typedef std::shared_ptr< C3DFVectorfield > P3DFVectorfield;
33 
44 typedef std::shared_ptr<C3DImageCost > P3DImageCost;
45 
47 public:
62  C3DImageRegister(size_t start_size, C3DImageCost& cost, size_t max_iter,
63  C3DRegModel& model, C3DRegTimeStep& time_step,
64  const C3DInterpolatorFactory& ipf, float outer_epsilon, bool save_steps);
65 
72  P3DFVectorfield operator () (const C3DImage& source, const C3DImage& reference);
73 private:
74  void reg_level(const C3DImage& source, const C3DImage& reference, C3DFVectorfield& result);
75  void reg_level_regrid(const C3DImage& source, const C3DImage& reference, C3DFVectorfield& result);
76  void reg_level_regrid_opt(const C3DImage& source, const C3DImage& reference, C3DFVectorfield& result);
77  size_t m_start_size;
78  C3DImageCost& m_cost;
79  size_t m_max_iter;
80  C3DRegModel& m_model;
81  C3DRegTimeStep& m_time_step;
82  const C3DInterpolatorFactory& m_ipf;
83  float m_outer_epsilon;
84  bool m_save_steps;
85  size_t m_mnum;
86 };
87 
88 typedef std::shared_ptr<C3DRegModel > P3DRegModel;
89 
91 
92 #endif
The time-step part of time-marching registration algorithms.
Definition: 3d/timestep.hh:38
The generic cost function interface.
Definition: core/cost.hh:64
a 3D field of floating point single accuracy 3D vectors
#define NS_MIA_BEGIN
conveniance define to start the mia namespace
Definition: defines.hh:33
#define EXPORT_3D
Definition: defines3d.hh:44
std::shared_ptr< C3DFVectorfield > P3DFVectorfield
pointer type for a 3D vector field
Definition: multireg.hh:36
The generic base type of a 3D image.
Definition: 3d/image.hh:46
A factory to create interpolators of a given type by providing input data.
std::shared_ptr< C3DImageCost > P3DImageCost
A 3D non-rigid image registration class.
Definition: 3d/register.hh:44
std::shared_ptr< C3DFVectorfield > P3DFVectorfield
Definition: 3d/register.hh:32
#define NS_MIA_END
conveniance define to end the mia namespace
Definition: defines.hh:36
std::shared_ptr< C3DRegModel > P3DRegModel
Definition: 3d/register.hh:88