MIA - a toolkit for gray scale medical image analysis
MIA provides a combination of command line tools, plug-ins, and libraries that make it possible run image processing tasks interactively in a command shell and prototype by using the according shell scripting language. It is build around a plug-in structure that makes it easy to add funcionality without compromising the original code base and it makes use of a wide variety of external libraries that provide additional funcionality. MIA is written in C++ and makes heavy use of C++11 constructs.
MIA can be compiled for various architectures and POSIX-compatible operating systems. Specifically, Debian Gnu/Linux packages for the stable MIA release are provided by the Debian-med Pure Blend, and are availabe for Debian/Jessie. Backports to the stable release Debian/wheezy are provided by the NeuroDebian project. Packages for Ubuntu 14.04 (LST) are available from the PPA: gert-die/trusty-mia
If you use the software for scientific work please reference it as
G. Wollny, P. Kellman, M.-J. Ledesma-Carbayo, M. M. Skinner, J.-J. Hublin, Th. Hierl, MIA - A Free and Open Source Software for Gray Scale Medical Image Analysis, Source Code for Biology and Medicine, 2013, 8:20
For further information, downloads, issue tracking, etc, please consult the Wiki.