Chapter 2. Program Reference

Table of Contents

Image conversion
mia-2dimageselect
mia-2dmultiimageto3d
mia-2dto3dimage
mia-2dto3dimageb
mia-3dgetslice
mia-3dimageselect
mia-raw2image
mia-raw2volume
Analysis, filtering, combining, and segmentation of 2D images
mia-2davgmasked
mia-2dbinarycombine
mia-2ddistance
mia-2dfuzzysegment
mia-2dgrayimage-combine-to-rgb
mia-2dimagecombine-dice
mia-2dimagecombiner
mia-2dimagecreator
mia-2dimagefilter
mia-2dimagefilterstack
mia-2dimagefullstats
mia-2dimageseries-maximum-intensity-projection
mia-2dimagestats
mia-2dlerp
mia-2dmultiimagevar
mia-2dsegment-ahmed
mia-2dsegment-fuzzyw
Registration, Comparison, and Transformation of 2D images
mia-2dcost
mia-2ddeform
mia-2dfluid
mia-2dforce
mia-2dimageregistration
mia-2dmulti-force
mia-2dmultiimageregistration
mia-2dtransform
mia-2dtransformation-to-strain
Registration of series of 2D images
mia-2dgroundtruthreg
mia-2dmany2one-nonrigid
mia-2dmyoica-full
mia-2dmyoica-nonrigid
mia-2dmyoica-nonrigid-parallel
mia-2dmyoica-nonrigid2
mia-2dmyoicapgt
mia-2dmyomilles
mia-2dmyoperiodic-nonrigid
mia-2dmyopgt-nonrigid
mia-2dmyoserial-nonrigid
mia-2dmyoset-all2one-nonrigid
Tools for the Analysis of 2D image series
mia-2deval-transformquantity
mia-2dtrackpixelmovement
Tools for Myocardial Perfusion Analysis
mia-2dmyocard-ica
mia-2dmyocard-icaseries
mia-2dmyoseries-compdice
mia-2dmyoseries-dice
mia-2dsegcompare
mia-2dseghausdorff
mia-2dsegmentcropbox
mia-2dsegseriesstats
mia-2dsegshift
mia-2dsegshiftperslice
mia-2dseries-mincorr
mia-2dseries-sectionmask
mia-2dseries-segdistance
mia-2dseries2dordermedian
mia-2dseries2sets
mia-2dseriescorr
mia-2dseriesgradMAD
mia-2dseriesgradvariation
mia-2dserieshausdorff
mia-2dseriessmoothgradMAD
mia-2dseriestovolume
Processing of series of 2D images in a 3D fashion (out-of-core)
mia-2dstackfilter
mia-3ddistance
mia-multihist
Analysis, filtering, combining, and segmentation of 3D images
mia-3dbinarycombine
mia-3dbrainextractT1
mia-3dcombine-imageseries
mia-3dcombine-mr-segmentations
mia-3dcrispsegment
mia-3ddistance-stats
mia-3dfuzzysegment
mia-3dgetsize
mia-3dimagecombine
mia-3dimagecreator
mia-3dimagefilter
mia-3dimagefilterstack
mia-3dimagestatistics-in-mask
mia-3dimagestats
mia-3disosurface-from-stack
mia-3dlerp
mia-3dmaskseeded
mia-3dpropose-boundingbox
mia-3dsegment-ahmed
Registration, Comparison, and Transformation of 3D images
mia-3dcost
mia-3dcost-translatedgrad
mia-3ddeform
mia-3dfluid
mia-3dforce
mia-3dlandmarks-distances
mia-3dlandmarks-transform
mia-3dnonrigidreg
mia-3dnonrigidreg-alt
mia-3drigidreg
mia-3dtransform
mia-3dtransform2vf
mia-3dvf2transform
mia-3dvfcompare
Registration of series of 3D images
mia-3dmany2one-nonrigid
mia-3dmotioncompica-nonrigid
mia-3dprealign-nonrigid
mia-3dserial-nonrigid
Tools for the Analysis of 3D image series
mia-3deval-transformquantity
mia-3dseries-track-intensity
mia-3dtrackpixelmovement
Miscellaneous programs
mia-3dfield2norm
mia-3dimageaddattributes
mia-3dvectorfieldcreate
mia-cmeans
mia-filenumberpattern
mia-labelsort
mia-myowavelettest
mia-wavelettrans
Creation, analysis, and filtering of triangular 3D meshes
mia-3disosurface-from-volume
mia-mesh-deformable-model
mia-mesh-to-maskimage
mia-meshdistance-to-stackmask
mia-meshfilter
Help
mia-plugin-help
Work in progress
mia-2dmyocard-segment