mia-3drigidreg

Sysnopis:

mia-3drigidreg {-i io} {-r io} {-o io} [ options ...]

Description:

This program implements the registration of two gray scale 3D images. The transformation is not penalized, therefore, one should only use translation, rigid, or affine transformations as target and run mia-3dnonrigidreg of nonrigid registration is to be achieved.

Options:

File I/O

-i, --in-image=(input, required); io

test image. For supported file types see Plugin type: 3dimage/io

-r, --ref-image=(input, required); io

reference image. For supported file types see Plugin type: 3dimage/io

-o, --out-image=(output, required); io

registered output image. For supported file types see Plugin type: 3dimage/io

-t, --transformation=(output); io

transformation output file name. For supported file types see Plugin type: 3dtransform/io

-c, --cost=ssd; factory

cost function. For supported plug-ins see Plugin type: 3dimage/cost

-l, --levels=3; ulong

multigrid levels

-O, --optimizer=gsl:opt=simplex,step=1.0; factory

Optimizer used for minimization. For supported plug-ins see Plugin type: minimizer/singlecost

-f, --transForm=rigid; factory

transformation type. For supported plug-ins see Plugin type: 3dimage/transform

Help & Info

-V, --verbose=warning; dict

verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

info:Low level messages
trace:Function call trace
fail:Report test failures
warning:Warnings
error:Report errors
debug:Debug output
message:Normal messages
fatal:Report only fatal errors
--copyright=(); bool

print copyright information

-h, --help=(); bool

print this help

-?, --usage=(); bool

print a short help

--version=(); bool

print the version number and exit

Processing

--threads=-1; int

Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

Example:

Register image test.v to image ref.v affine and write the registered image to reg.v. Use two multiresolution levels and ssd as cost function.

mia-3drigidreg -i test.v -r ref.v -o reg.v -l 2 -f affine -c ssd

Author(s):

Gert Wollny