Given a set of images of temporal sucession, this program evaluates the gradient variation of the pixel-wise time-intensity curves of this series. If the input image set provides a segmentation, then this segmentation can be used to create a bounding box and restrict evaluation to this box.
input segmentation set
output file name. For supported file types see Plugin type: 2dimage/io
Skip files at the beginning
Enlarge cropbox by number of pixels
crop image before running statistics
verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:
|info:||Low level messages|
|trace:||Function call trace|
|fail:||Report test failures|
|fatal:||Report only fatal errors|
print copyright information
print this help
print a short help
print the version number and exit
Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).
Evaluate the gradient-variation image of the bounding box surrounding the segmentation from a series 'segment.set'. The bounding box will be enlarged by 3 pixels in all directions. Store the image in OpenEXR format.
mia-2dseriesgradvariation -i segment.set -o gradvar.exr -c -e 3